Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFI-KSSHARPAFKGLYGFPNSVCMSLNEVVIHGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESLMHAISSIRVGMHFKELSQILEGAITERGFVPLKGFCGHGIGKKPHEEPEIPNYLEKGVKANSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEHTIAIVGNKAVILTER
4FO8 Chain:B ((2-250))
-TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHY----GRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLR
General information:
TITO was launched using:
RESULT:
Template:
4FO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129845 for 2141 contacts (-60.6/contact) +
2D Compatibility (PS) -27321 + (NN) -10899 + (LL) 380
1D Compatibility (HY) -16800 + (ID) 4600
Total energy: -189085.0 ( -88.32 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_4FO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FO8-query.scw
PDB file :
Tito_Scwrl_4FO8.pdb
: