Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYTELKDKSIKELEELLHAKKAELFELRVKLKN-MQLSNPNEIKKARRNIARINTAINAYYSSSVE
1VQ8 Chain:V ((4-66))
LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGD----
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2011 for 355 contacts (5.7/contact) +
2D Compatibility (PS) -6988 + (NN) -5858 + (LL) 240
1D Compatibility (HY) 800 + (ID) 950
Total energy: -10745.0 ( -30.27 by residue)
QMean score : 0.840
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: