Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLFDYAPLSLAWREFLQSEFKKPYFLEIEKRYLEALKSPKTIFPKSSNLFCAFNLTPPYAVKIILLGQDPYHSTYLENEQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAKRGMLLLNAILSVEKNQAASHKYIGWEAFSDQILIRLFETTTPLIVVLLGKVAQKKIALIPKNKHIIITAPHPSPLS--RGFLGSGVFTSVQKAYREVYRKDFDFSL
1OKB Chain:A ((7-204))
-----------TWRRELAAEFEKPYFKQL-MSFVADERSRHTVYPPADQVYSWTEMCDIQDVKVVILGQDPYHGP---NQ-----AHGLCFSVQKPVPPPPSLVNIYKELCTDIDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKDRGWETFTDAVIKWLSVNREGVVFLLWGSYAHKKGATIDRKRHHVLQAVHPSPLSAHRGFLGCKHFSKANGLLKLSGTEPINWRA
General information:
TITO was launched using:
RESULT:
Template:
1OKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116498 for 1531 contacts (-76.1/contact) +
2D Compatibility (PS) -20930 + (NN) -11159 + (LL) 1852
1D Compatibility (HY) -14800 + (ID) 4400
Total energy: -165935.0 ( -108.38 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_1OKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKB-query.scw
PDB file :
Tito_Scwrl_1OKB.pdb
: