Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAGIIGLGLMGGSLGLALQEWGRFKSVIGYDHNALHAKLALTLGLVDE-CVEFEKI--LECDVIFLAIPVEGIIECLKKMTPI-KKSATIIDLGGAKAQILHNIPKSIRQNFIAAHPMCGTEFYGPKASVKGLYENALVILCDLEDSGTEQVEIAKEIFLGIKARLIKMKSNEHDTHVAYISHLPHVLSYALANSVLKQNDPEM-ILSLAGGGFRDMSRLSKSSPLMWKDIFKQNRDNVLEAIEKCEKEIAQAKAWIENNDYESLAEWMAQANKLQEFM
3GGP Chain:B ((38-306))
----IVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRME-
General information:
TITO was launched using:
RESULT:
Template:
3GGP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163887 for 2081 contacts (-78.8/contact) +
2D Compatibility (PS) -28569 + (NN) -11028 + (LL) 164
1D Compatibility (HY) -22000 + (ID) 4300
Total energy: -229620.0 ( -110.34 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_3GGP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GGP-query.scw
PDB file :
Tito_Scwrl_3GGP.pdb
: