Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLVGLGNPTLRYDHTRHNAGFDILDSLVSELDLSFIFSPKHNAYLCVY----KDFILLKPQTYMNLSGESVLSAKNFYKTK--ELLIVHDDLDLPLGVVKFKKGGGNGGHNGLKSIDALC--SNSYYRLRVGISKGIN---ITEHVLSKFHNNEEPLKNAAFEHAKNALKFFIESHDFNATQNRFTLKKPLQIES
4QBK Chain:A ((4-187))
VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA------
General information:
TITO was launched using:
RESULT:
Template:
4QBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96369 for 1447 contacts (-66.6/contact) +
2D Compatibility (PS) -18472 + (NN) -3015 + (LL) 444
1D Compatibility (HY) -10400 + (ID) 3400
Total energy: -131212.0 ( -90.68 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_4QBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QBK-query.scw
PDB file :
Tito_Scwrl_4QBK.pdb
: