Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------------------------------------------MEGVLNFLTNINVIFTLLGYLIGGIPFGYALMKIFYGMDITKIGSGG----IGATN-VLRALQSKGVSNAKQMALLVLILDLFK-GMFAVFLSKLFGLDYSLQWMVAIASILGHCYS-PFLNFNGG-KGVSTIMGSVVLLIPIESLIGLTVWFF-VGKVLKISSLASILGVGTATVLIFFV--------PYMHIPDSV-NILK-EVGTQTPMVLIFIFTLIKHAGNIFNLLTGKEKKVL------------------------------------------------------------------------------------------------------------------------------------------------- |
| 4C8H Chain:A ((25-476)) | FRYMPFSPAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPH-DSIHSNWTKII----------PLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQFHGLSYSLSEL-KRYYKRECPLPMSLPNINSDMKKDAN--------------LDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSKWRSPEESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAY---DTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKAILNKEIQIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYGNENEVLAALNGAYDKALLRLFASACSDQNVEKALSLAHELKQDRALTAAVKISERAELPSLVKKINNIREARYEQQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C8H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144026 for 1268 contacts (-113.6/contact) +
2D Compatibility (PS) -20005 + (NN) 4122 + (LL) 2180
1D Compatibility (HY) -6400 + (ID) 2000
Total energy: -166129.0 ( -131.02 by residue)
QMean score : 0.160
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