Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQNNKSNAAHAEGGIPWKHIVGFALSVVLTLLAVWVALYSTLTTNVKVVIIFIFAFIQAALQLLMFMHMTEGRDGKIQI---GNILFAAFIAIVVVIGSYWVMEIGHMNHLL
3DL8 Chain:G ((114-173))
---------------------------------------------EYTKYLTLFVATVQSLGIAFWIRG-QVSP-KGIPVVENPGISFILITVLTLVAGTMFLVWIA------
General information:
TITO was launched using:
RESULT:
Template:
3DL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47292 for 305 contacts (-155.1/contact) +
2D Compatibility (PS) -6066 + (NN) -3673 + (LL) 4452
1D Compatibility (HY) -5200 + (ID) 250
Total energy: -58029.0 ( -190.26 by residue)
QMean score : -0.070
(partial model without unconserved sides chains):
PDB file :
Tito_3DL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DL8-query.scw
PDB file :
Tito_Scwrl_3DL8.pdb
: