Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILKEVCIENTTNLVNVIEAGANRVELCDNLA-----------------EGGTSV--SYGVAKHVVKICHEQNVSVMAMVRPRKGNFVYTKEEISVMIDDILMYKKIAVDGVVFGCITDSGLLDKPAINELLKAAA--GLEVTFHMAFDELVETEKLSAIDWLVEQGVTRIL--THGGDGAKLPE----ETFVQWRKYIDYAAGRIIILPGGGIKS-HNLEWIIKETGAAEIHGTDLFGER
1RD5 Chain:A ((36-232))
-----------EALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE---LSCPVVLLSYYKP-----------IMFRSLAKMKEAGVHGLIVPDLPYVA------AHSLWSEAKNNNLELVLLTTP-----AIPEDRMKEITKASEGFVYLVSVNGVTG-PRANVNPRVESLIQEVKK--VTNKPVAVGFGISKPEHVKQIAQ-WGADGVIIGSA----
General information:
TITO was launched using:
RESULT:
Template:
1RD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99472 for 1185 contacts (-83.9/contact) +
2D Compatibility (PS) -18681 + (NN) -10833 + (LL) 3564
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -131422.0 ( -110.90 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_1RD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RD5-query.scw
PDB file :
Tito_Scwrl_1RD5.pdb
: