Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAKNTHMNVTVDFTNWGASKYDLRIPVHQPIKALIINLAETLKIDYKDLSKCTIKTTNKAILLSDDDKLTNFQIADGDILEIL
3V6C Chain:B ((14-86))
--PRGSMQIFVNTLT--GTHITLEVEPSDTIENVKAKIQDKEGIP-----PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL-
General information:
TITO was launched using:
RESULT:
Template:
3V6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47674 for 488 contacts (-97.7/contact) +
2D Compatibility (PS) -7704 + (NN) -1266 + (LL) 708
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -58836.0 ( -120.57 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_3V6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V6C-query.scw
PDB file :
Tito_Scwrl_3V6C.pdb
: