Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKLPPEADYLNDETLEVYENDKKKYDQTNQLITNNSVTILLGDFCYYESAWSSRWRDNRFWIGSKVS
2AYV Chain:A ((133-160))
---PNPDDPLVPEIAHLYKSDRMRYDQTARE------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2AYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10217 for 145 contacts (70.5/contact) +
2D Compatibility (PS) -3028 + (NN) -2024 + (LL) 2564
1D Compatibility (HY) -400 + (ID) 500
Total energy: 6829.0 ( 47.10 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_2AYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AYV-query.scw
PDB file :
Tito_Scwrl_2AYV.pdb
: