Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYFVYDIGGTFVKFALMENNGTVKMKDKFPTTAKSAEELVAQMVEKWRPYRT--EVKGIAVSCPGVVDTEKGVIYQGGSLLFMHEKNLAEMLARECHVPVVLQNDAKSAALAELWLGVAKNVHSAAILTLGSGVGGGIIMDGKLQSGYHLMAGEVSFMETSFDT---KKLRGTFFGRTGSAVELIKRIASKKNLP---------------NKKDGEHVFELINQGDEEANAIFDAYIYELASQILNIQYLIDPEIIAIGGGISA-QPVVVERLNDAVAEIKAANPYHAAQPKIVTCHFQNDANLYGALYNFFLQMDAQNKR |
3VGL Chain:A ((3-313)) | LTIGVDIGGTKIAAGVVDEEGRILSTFKVATPP-TAEGIVDAICAAVAGASEGHDVEAVGIGAAGYVDDKRATVLFA-PNIDWRHEPLKDKVEQRVGLPVVVENDANAAAWGEYRFGAGQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRANATPENAAVLLGLGDGSVDGIEGKHISEAARQGDPVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGG-EWRPHAQVLAAQLGGKAGLVGAADLARQG------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190449 for 2738 contacts (-69.6/contact) +
2D Compatibility (PS) -31710 + (NN) -16652 + (LL) 232
1D Compatibility (HY) -12000 + (ID) 3200
Total energy: -253779.0 ( -92.69 by residue)
QMean score : 0.509
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