Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHY-----AEKYGPMYDYGGYFINFGNSIDVYKKF
3UO8 Chain:C ((25-107))
--------------------------------------------------------------------------------------PLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLLDKGVYGLLYYAGHGYENFGNSFMV----
General information:
TITO was launched using:
RESULT:
Template:
3UO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20808 for 275 contacts (-75.7/contact) +
2D Compatibility (PS) -6199 + (NN) -443 + (LL) 7480
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -25820.0 ( -93.89 by residue)
QMean score : 0.080
(partial model without unconserved sides chains):
PDB file :
Tito_3UO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UO8-query.scw
PDB file :
Tito_Scwrl_3UO8.pdb
: