Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQVIETLFVSG-LVEEKGL---------------------VPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR-----------
3GBY Chain:A ((2-128))
----NASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKC--SVVPLADEDGRYEGVVSRKRILGFLAERI
General information:
TITO was launched using:
RESULT:
Template:
3GBY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33773 for 631 contacts (-53.5/contact) +
2D Compatibility (PS) -9983 + (NN) 1914 + (LL) 812
1D Compatibility (HY) 400 + (ID) 700
Total energy: -41330.0 ( -65.50 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_3GBY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GBY-query.scw
PDB file :
Tito_Scwrl_3GBY.pdb
: