Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKTKQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTLSKQITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWYVKTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENADKLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALTISYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRIQTQIANQVKKASVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD |
| 4Q2E Chain:A ((29-290)) | ITASVVAPFVVLCFVSYESLIGLVSAILILAGYELITL--EMKERDARFFYVILLALYPVLYGLVFEE-------------------------PTQPLSILFITGVVFSLITDKDPSQVFKTVAAFSIALIYVTFFLS------FFLPIYRDFGAANAL-LVLTSTWVFDSFAYFTGLKF--------------------GRTRIS------------PRYSPRKSLEGVIGG---FLGVVIYTFLYRLVVNDLLSVN-------------VICFRTFLPFAATVAIMDTFGDIFECALKRHY------------------------------GVKDSGKTL-----------PGHGGMLDRIDGLLFVAPVSYIVFKILE--GVVR-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4Q2E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 569 for 2058 contacts (0.3/contact) +
2D Compatibility (PS) -25678 + (NN) 3204 + (LL) 8340
1D Compatibility (HY) -16400 + (ID) 2450
Total energy: -32415.0 ( -15.75 by residue)
QMean score : 0.078
|
|
|