Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLFKWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
4CYU Chain:B ((4-140))
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAP---TEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIA---ANVVE-------------------
General information:
TITO was launched using:
RESULT:
Template:
4CYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89516 for 1008 contacts (-88.8/contact) +
2D Compatibility (PS) -14236 + (NN) -5648 + (LL) 1504
1D Compatibility (HY) -14400 + (ID) 3150
Total energy: -125446.0 ( -124.45 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_4CYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CYU-query.scw
PDB file :
Tito_Scwrl_4CYU.pdb
: