Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNISDIIEAYLKQVLESS-EAVEIKRSEIADKFECVPSQINYVINTRFTMERGYIVESKRGGGGYIRIIKVKMNDKLQLLEAIISMVHDKKVSQSFSEDVILRLLEEEVITKKEARLMVAALDREVLILPLPDRDILRSRILEAMLVALKYD
1QBJ Chain:A ((9-70))
-----QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL--YSLAKKGKLQKEA-GTPPLWKIA-----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1QBJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45124 for 405 contacts (-111.4/contact) +
2D Compatibility (PS) -6556 + (NN) -105 + (LL) 9212
1D Compatibility (HY) 400 + (ID) 550
Total energy: -42723.0 ( -105.49 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1QBJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QBJ-query.scw
PDB file :
Tito_Scwrl_1QBJ.pdb
: