Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNIMLVCNAGMSTGMLAKKIEAAS-GNTLNVTAYSES--EYTDYLDGVDLVLIGPQIRFLMPQIKQAV---SVPVHAISPVKYGIM--DGKGVYEDIQKLIGG
3NBM Chain:A ((6-108))
ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ-
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77956 for 714 contacts (-109.2/contact) +
2D Compatibility (PS) -10235 + (NN) -1768 + (LL) -172
1D Compatibility (HY) -6800 + (ID) 800
Total energy: -97731.0 ( -136.88 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: