Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGD-LQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
4P78 Chain:A ((1-86))
MIYPIFIFKT-------------------VEGFDGYFPDIDGCFFAGNTFADISKNAEEAFAVHIEALMNE--GFPLPSPPKDPHRYIDD---------PRLKEEGGILGFVEIDP----
General information:
TITO was launched using:
RESULT:
Template:
4P78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24796 for 564 contacts (-44.0/contact) +
2D Compatibility (PS) -9413 + (NN) -4094 + (LL) 2592
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -39561.0 ( -70.14 by residue)
QMean score : 0.188
(partial model without unconserved sides chains):
PDB file :
Tito_4P78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P78-query.scw
PDB file :
Tito_Scwrl_4P78.pdb
: