Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLTKRIIPCLDVTAGRVVKGVNFVSLTDVGDPVEIAKAYNEAGADELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISLNSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKAVQLGAGEILLTSMDGDGTKNGYDIPLTKAISEAVSVPVIASGGCGNAAHMVEVFEKTKATAALAASIFHYGELSIKNVKTTLLEKGVNIRP
3ZR4 Chain:E ((1-249))
MLAKRIIACLDVKDGRVVK---------SGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEA-FLAGADAALAASVFHFREIDVRELKEYLKKHGVNVR-
General information:
TITO was launched using:
RESULT:
Template:
3ZR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142455 for 2063 contacts (-69.1/contact) +
2D Compatibility (PS) -26400 + (NN) -11215 + (LL) 380
1D Compatibility (HY) -21200 + (ID) 6200
Total energy: -207090.0 ( -100.38 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_3ZR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZR4-query.scw
PDB file :
Tito_Scwrl_3ZR4.pdb
: