Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGALEGRPINLEVIQKMKITAKIPVQVGGGIRSMAQVDYYLESGIDRVIIGSAALTDPDFLRAAVQKYGAKIAAGIDAK--NGFVATRGWLDVSQVSYL-DLAKRMEKVGVETIIYTDISRDGTLTGPNLEQMANLKEHVKVNLIASGGVSSRADLEALAQL---GLYGAIAGKALYNHHISMSDIVE-VEQIAY
4AXK Chain:B ((5-245))
--ILPAVDVVNGQAVRLDQGEAGTEKSYGT-PLESALRWQEQGAEWLHFVDLDAAFN-RGSNHELMAEITRQLDIKVELTGGIRDDASLERALATGATRVNIGTAALEKPEWIADVIRRHGEKIAVDIAVRLENGEWRT----------DLWEVLERLDSQGCSRFVVTDVSKDGTLTGPNVDLLRDVAAATDAPIVASGGISTLEDVLGLAKYQDEGIDSVIIGKALYEHRFTLAEALEAVEKL--
General information:
TITO was launched using:
RESULT:
Template:
4AXK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167465 for 1798 contacts (-93.1/contact) +
2D Compatibility (PS) -24808 + (NN) -10493 + (LL) 948
1D Compatibility (HY) -16000 + (ID) 4200
Total energy: -222018.0 ( -123.48 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4AXK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AXK-query.scw
PDB file :
Tito_Scwrl_4AXK.pdb
: