Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAFDLEDFLTTAITDYAKEKVEAGTWDEEES---LAKSQDSF-NKLLYDGITTPNEYLYSIISGEKIGYIWFHV----------DETRSGKHAFIYDFVIFEAFR-GKGFGTKTLAAL-DVLAKEMQITKIGLHVFAHNQTAIGLYNKVGFQNTDITMAKYL
2PR8 Chain:B ((39-161))
--------------------------WGGEEARPTLADVQEQYLPSVLAQESVTP--YI-AMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGI--DLSLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFER---------
General information:
TITO was launched using:
RESULT:
Template:
2PR8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60312 for 617 contacts (-97.8/contact) +
2D Compatibility (PS) -11209 + (NN) -1374 + (LL) 3516
1D Compatibility (HY) -5200 + (ID) 2000
Total energy: -76579.0 ( -124.12 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_2PR8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PR8-query.scw
PDB file :
Tito_Scwrl_2PR8.pdb
: