Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVGNNIAKSYPNKLVLQNVDFEAKSGDMIVLTGENGSGKTTLLDMLASLKKPDSGTLELDNELFTTNDIRQQIAYLNN--ELYAKKSTTIEDFMKQHGLLFENIELDKWDRLLAGWRINKRLKLGE---------LSTGMLMKVKIGSVLARKAKLYLYDEPFASIDIMARSEVMKAIISETNPDAITIISSHHLEGTEKLYS--KLWLIKDNTLQTIETETYREETGNALIDFYKEEMNK
2PJZ Chain:A ((7-205))
--VGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGL-LPYSGNIFING--MEVRKIRNYIRYSTNLPEAY-EIGVTVNDIV----YLYE--ELKGLDRDLF-LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD-AARRHVISRYIKEYGKEGILV--THELD-MLNLYKEYKAYFLVGNRLQ-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82867 for 1403 contacts (-59.1/contact) +
2D Compatibility (PS) -19638 + (NN) -4410 + (LL) 3056
1D Compatibility (HY) -16400 + (ID) 3350
Total energy: -123609.0 ( -88.10 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_2PJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PJZ-query.scw
PDB file :
Tito_Scwrl_2PJZ.pdb
: