Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTINSVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIWMFKAFLGKAPLE
2IY4 Chain:V ((7-156))
------VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIWMFKAFLGKAPLE
General information:
TITO was launched using:
RESULT:
Template:
2IY4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54516 for 1104 contacts (-49.4/contact) +
2D Compatibility (PS) -16599 + (NN) -13168 + (LL) 420
1D Compatibility (HY) -22000 + (ID) 7500
Total energy: -113363.0 ( -102.68 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_2IY4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IY4-query.scw
PDB file :
Tito_Scwrl_2IY4.pdb
: