Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
3CMD Chain:B ((10-188))
MITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKRIIAVHVPS----SLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHINDQNPFAL--------
General information:
TITO was launched using:
RESULT:
Template:
3CMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104025 for 1334 contacts (-78.0/contact) +
2D Compatibility (PS) -18413 + (NN) -8217 + (LL) 104
1D Compatibility (HY) -20400 + (ID) 5500
Total energy: -156451.0 ( -117.28 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3CMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CMD-query.scw
PDB file :
Tito_Scwrl_3CMD.pdb
: