Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVITYGTFDLLHWGHIHLLKRAKALGDYLIVAISSDEFNRIKHKEAYHSYEHRKLIIEAIRYVDEVIPENNWEQKRDDIEKYGIDVFVMGDDWEGEFDFLKDVCEVVYLPRTEGISTSQIKDELK
1N1D Chain:B ((1-126))
MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLPRTEGISTTKIKEEI-
General information:
TITO was launched using:
RESULT:
Template:
1N1D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64817 for 935 contacts (-69.3/contact) +
2D Compatibility (PS) -13981 + (NN) -7020 + (LL) 64
1D Compatibility (HY) -17600 + (ID) 5100
Total energy: -108454.0 ( -115.99 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_1N1D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N1D-query.scw
PDB file :
Tito_Scwrl_1N1D.pdb
: