Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD
4TMY Chain:B ((2-112))
----GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVV------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4TMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50892 for 897 contacts (-56.7/contact) +
2D Compatibility (PS) -11861 + (NN) -5632 + (LL) 7384
1D Compatibility (HY) -9600 + (ID) 2050
Total energy: -72651.0 ( -80.99 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_4TMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TMY-query.scw
PDB file :
Tito_Scwrl_4TMY.pdb
: