Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNIHRSITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
3W6V Chain:A ((37-140))
------------------------------------------------------------------------------SDPLAEVVAWALEHLHEQFDVETLAARAYMSRRTFDRRFRSLTGSAPLQWLITQRVLQAQRLLETSDYSVDEVAGRCGFRSPVALRGHFRRQLGSSPAAYRAAY-
General information:
TITO was launched using:
RESULT:
Template:
3W6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48130 for 740 contacts (-65.0/contact) +
2D Compatibility (PS) -10876 + (NN) -3621 + (LL) 4804
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -64473.0 ( -87.13 by residue)
QMean score : 0.724
(partial model without unconserved sides chains):
PDB file :
Tito_3W6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W6V-query.scw
PDB file :
Tito_Scwrl_3W6V.pdb
: