Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYIKNPAKIEEKSFEIIQQIIDDIRPDYTFQNKLEEAIIKRAIHTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCYVSDPETMEIAKQHGITRSMAGIKLASLKDGPKLFVLGNAPTAVYKIIEMVESGQLQADAVVAVPVGFVGAAECKEEILE--TDIPAIVARGRKGGSNLAAAIINAILITM
1F2V Chain:A ((4-208))
YDYIRDGNAIYERSFAIIRAEADLS----RF-SEEEADLAVRMVHACGSVEATRQFVFSPDFVSSARAALKAGAPILCDAEMVAHGVTRARL-PAGNEVICTLRDPRTPALAAEIGNTRSAAALKLWSERLAGSVVAIGNAPTALFFLLEMLRDGAPKPAAILGMPVGFVGAAESKDALAENSYGVPFAIVRGRLGGSAMTAAALNSLARP-
General information:
TITO was launched using:
RESULT:
Template:
1F2V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168067 for 1795 contacts (-93.6/contact) +
2D Compatibility (PS) -22470 + (NN) -10812 + (LL) 228
1D Compatibility (HY) -8400 + (ID) 3350
Total energy: -212871.0 ( -118.59 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_1F2V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F2V-query.scw
PDB file :
Tito_Scwrl_1F2V.pdb
: