Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------MPSIRYIVKTDVAE-----TFEIIKAGQVGSN----IVFSEVRTFDFGELATLACEK-----FYFRSSNRAALFVTINNFHGETEVTIISTGSSNGFFTG---IDWGAAFDYMHSVVADL---KRVAIREVAIEKQEEI
2JKD Chain:A ((26-183))
ALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDNDYELIFMNVHH-
General information:
TITO was launched using:
RESULT:
Template:
2JKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70677 for 741 contacts (-95.4/contact) +
2D Compatibility (PS) -12524 + (NN) 1065 + (LL) 204
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -85882.0 ( -115.90 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_2JKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JKD-query.scw
PDB file :
Tito_Scwrl_2JKD.pdb
: