Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQGGQGLQDYYLNQLRKEKILATVFLTNGFQLRGRVVSFDNFTVLLDVEGKQQLVFKHAISTFSPQKNVALNPDAE
4NL3 Chain:J ((1-73))
MKQGGQGLQDYYLNQLRKEKILATVFLTNGFQLRGRVVSFDNFTVLLDVEGKQQLVFKHAISTFSPQKNVALN----
General information:
TITO was launched using:
RESULT:
Template:
4NL3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40610 for 452 contacts (-89.8/contact) +
2D Compatibility (PS) -7743 + (NN) -879 + (LL) 32
1D Compatibility (HY) -11200 + (ID) 3650
Total energy: -64050.0 ( -141.70 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_4NL3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NL3-query.scw
PDB file :
Tito_Scwrl_4NL3.pdb
: