Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLFRQDENILNSELAEDLPIPRHVAIIMDGNGRWAKKRFLPRIAGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSFVPELIEENVRVNVMGYRENLPDHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKEAMKELELEGKSADDLTEEKLNDHLMSSGLG----DPDLLIRTSGELRLSNFMLWQLAYSEFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL
4Q9M Chain:B ((13-239))
----------------------VPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRR-------
General information:
TITO was launched using:
RESULT:
Template:
4Q9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103901 for 1785 contacts (-58.2/contact) +
2D Compatibility (PS) -24297 + (NN) -9142 + (LL) 1840
1D Compatibility (HY) -21600 + (ID) 6050
Total energy: -163150.0 ( -91.40 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9M-query.scw
PDB file :
Tito_Scwrl_4Q9M.pdb
: