Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAV--SKYVHVTSYEPIDGRKMWEGTLVSYDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF
3HFN Chain:A ((8-68))
------------------------------------------------------------------------------------SLPSIRQLQNLIKQAAPVEIKLV----TGDAITGRVLWQDPTCVCIAD------RQTTIWKQAIAYLQ-----
General information:
TITO was launched using:
RESULT:
Template:
3HFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23026 for 342 contacts (-67.3/contact) +
2D Compatibility (PS) -6241 + (NN) -3476 + (LL) 7252
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -29191.0 ( -85.35 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3HFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HFN-query.scw
PDB file :
Tito_Scwrl_3HFN.pdb
: