Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKIPLRKCIITGER-LPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKSVEACEKAKKKNAIFHQLKMPEQESFYDELIAY--VKSLEEPTNG--
4GVB Chain:B ((4-81))
---PRPVMCQCVDTTNGGVRLDAVTRAACSIDGYYT-------EKDGFCRAK---------------YSWDLFTSGQFYQACLRYSHAGTNCQPDPQYE
General information:
TITO was launched using:
RESULT:
Template:
4GVB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7309 for 491 contacts (-14.9/contact) +
2D Compatibility (PS) -7479 + (NN) -2408 + (LL) 1676
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -19470.0 ( -39.65 by residue)
QMean score : 0.334
(partial model without unconserved sides chains):
PDB file :
Tito_4GVB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GVB-query.scw
PDB file :
Tito_Scwrl_4GVB.pdb
: