Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VQQINWKKNVSFRSGSPAFTLLETILSITIILSISLLIPLFFQCYNKTIQLSNIDQTTEWQLFLIQTRLELEKATNIQIDGNKLSFSNGKDLITYSKYNDLVRRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSN-----TQIYTSVFALPEVVSNP
1P5V Chain:B ((14-149))
VEPA--RITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFT--DAAGDPMYLTFTSQ-----------DGNNHQFTT--KVIGKDSRDFDISPKVNGENLVG-----DDVVLATGSQDFFVRSIGSKGGKLAAGKYTD--AVTVTVSNQ
General information:
TITO was launched using:
RESULT:
Template:
1P5V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18287 for 888 contacts (-20.6/contact) +
2D Compatibility (PS) -13480 + (NN) 1556 + (LL) 2200
1D Compatibility (HY) -2000 + (ID) 1100
Total energy: -31111.0 ( -35.03 by residue)
QMean score : 0.131
(partial model without unconserved sides chains):
PDB file :
Tito_1P5V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P5V-query.scw
PDB file :
Tito_Scwrl_1P5V.pdb
: