Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNKRLIILLECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRSNLAANQLKKAIEWAWGTMIIGGLARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGASCLGTVLVSGIIISILLKTSPKLFLPK--
3RLB Chain:A ((17-192))
----NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTA--------PLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY
General information:
TITO was launched using:
RESULT:
Template:
3RLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182716 for 1412 contacts (-129.4/contact) +
2D Compatibility (PS) -17796 + (NN) -2943 + (LL) 884
1D Compatibility (HY) -24000 + (ID) 3000
Total energy: -229571.0 ( -162.59 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_3RLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLB-query.scw
PDB file :
Tito_Scwrl_3RLB.pdb
: