Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIGIIGAMEEEVELLKNSMSSVEEIVIGGAKFYIGEIASKEVVLLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDVTEFGYTYGQVPRMPAFYQGDAVLLKKAETIYREYFATSENKAVYGLVVTNDSFIMRPDQHEIIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLAAKQSATCI---IELLKTI
3DP9 Chain:C ((1-230))
MKIGIIGAMQQEVAILKDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQYAPDVVINTGSAGGFDASLNVGDVVISSEVRHHDADVTAFGYEIGQMAGQPAAFKADEKLMTVAEQALAQLPNT---HAVRGLICTGDAFVCTAERQQFIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMVELL---
General information:
TITO was launched using:
RESULT:
Template:
3DP9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162487 for 1992 contacts (-81.6/contact) +
2D Compatibility (PS) -24566 + (NN) -10931 + (LL) 316
1D Compatibility (HY) -24800 + (ID) 5650
Total energy: -228118.0 ( -114.52 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_3DP9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP9-query.scw
PDB file :
Tito_Scwrl_3DP9.pdb
: