Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIVEYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTNKLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHKKLNGYDRLILMKL
4M0K Chain:B ((28-190))
--LETLKQAIRTVPDFPEPGIQFKDITPVLGHPELLRLAIEALLEPFQEQEITKVVGIESRGFILGGMLAHHLDAGFVPVRKKGKLPYQTLAESYQLEYGTDTIEMHIDAIEPGDRVLIHDDVIATGGTAEATIRLVERAGGEVVGCAFLIELTGLQGRKRLPAH--------
General information:
TITO was launched using:
RESULT:
Template:
4M0K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125496 for 1239 contacts (-101.3/contact) +
2D Compatibility (PS) -17033 + (NN) 987 + (LL) 1340
1D Compatibility (HY) -13600 + (ID) 4250
Total energy: -158052.0 ( -127.56 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_4M0K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M0K-query.scw
PDB file :
Tito_Scwrl_4M0K.pdb
: