Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEAIVITSGKGGVGKTTSTANLGTALALQGKKVCLIDMDIGLRNLDVVLGLENRIIYDLVDVVEGRCKIHQAMIKDKRFDDLLFLLPAAQTTDKNAVSGEQMVDLINQLRP-DYDFILIDCPAGIETGYKNAVAGADKAIVVTTPEISAVRDADRIIGLL----EKEDIEPP---KLIINRIRTQMMMNGDVMDIDEITTHLSIELLGIIIDDDEVIRSSNSGDPVAMLPNNRASQGYRNIARRILGESIPLMSIETKKAGFFARLKQLFSGK
3R9J Chain:B ((2-258))
-ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN-LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKS------EPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEE----------------
General information:
TITO was launched using:
RESULT:
Template:
3R9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168632 for 2096 contacts (-80.5/contact) +
2D Compatibility (PS) -26142 + (NN) -7332 + (LL) 2028
1D Compatibility (HY) -24000 + (ID) 5600
Total energy: -229678.0 ( -109.58 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3R9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R9J-query.scw
PDB file :
Tito_Scwrl_3R9J.pdb
: