Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTLTNKLAEKEHAAVVTYIMGGDGGLDNLEEQLLFLEKSGVSAIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILNKLAMSK---VQIPLIIMSYINPIFHLGIPKFVELVQKTPVKGLIIPDLPYEHQKLITPELQGTDIALIPLVSLTSPKERLEEIAKQAEGFIYAVTVNGTTGVRSEFDAHIDSHLAYLKSISPVPVLAGFGVSSIEHVEKFA-HVCDGVIIGSKVVQMLHEEK------TAELGAFLQKAAEVRIKN
3VND Chain:A ((10-266))
------AALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVT--------PIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKIIEAHQHDEATLLAKLAEFTTAMKAA----
General information:
TITO was launched using:
RESULT:
Template:
3VND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -218180 for 2079 contacts (-104.9/contact) +
2D Compatibility (PS) -26323 + (NN) -17505 + (LL) 1288
1D Compatibility (HY) -10000 + (ID) 3350
Total energy: -274070.0 ( -131.83 by residue)
QMean score : 0.667
(partial model without unconserved sides chains):
PDB file :
Tito_3VND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VND-query.scw
PDB file :
Tito_Scwrl_3VND.pdb
: