Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTFQLVATAASGLEAIVGKEVARL----GYD--P-K---VENGKVYFEGD-------------LSAIARANLWLRVADRVKIVVGVFKAT---------TFDELFEKTKALPWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGA-GLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQIWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK-RM-PTWSVYVLTSYELFE---EVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED |
| 3TM4 Chain:A ((1-365)) | ---MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRF-G-TPLVNLDHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAEL-DGGSVLDPMCGSGTILIELALRRY--------------------------------------SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG------SMIPDLYMKFFNELAKVLEKRGVFIT-TEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVK----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -163475 for 2643 contacts (-61.9/contact) +
2D Compatibility (PS) -35085 + (NN) -15849 + (LL) 3672
1D Compatibility (HY) -17200 + (ID) 4300
Total energy: -232237.0 ( -87.87 by residue)
QMean score : 0.452
|
|
|