Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVSGFKGRMGHEVVKTVLREADLELVAVLDHEPKEKNINEMVEFSSLDVPVFGNLSEMLEEIKPDCVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRTIAESK-KIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAPSGTGVKTAEMMAETREFVKQGAADEVELIEGARGAEYEGMRIHSVRLPGLVAHQEVIFGAEGQGLTIRHDSYDRISFMSGVALSVRKTKELETLIYGLENILD
1YL5 Chain:B ((4-245))
-RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA---------------------GDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEPLLD
General information:
TITO was launched using:
RESULT:
Template:
1YL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116712 for 1935 contacts (-60.3/contact) +
2D Compatibility (PS) -25228 + (NN) -4332 + (LL) 1608
1D Compatibility (HY) -19600 + (ID) 5800
Total energy: -170064.0 ( -87.89 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1YL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YL5-query.scw
PDB file :
Tito_Scwrl_1YL5.pdb
: