Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKYCLVEKDTCIACGACSIHAPDVFDYDTEGLAFNILDNNTGTKEIPEDLVEMV-IDAEFACPSLSIKVSDSSFH
1SJ1 Chain:A ((2-65))
-WKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKV------EVIEDEELYNCAKEAMEACPVSAITIEE----
General information:
TITO was launched using:
RESULT:
Template:
1SJ1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43994 for 424 contacts (-103.8/contact) +
2D Compatibility (PS) -6595 + (NN) -3203 + (LL) -8
1D Compatibility (HY) -1200 + (ID) 950
Total energy: -55950.0 ( -131.96 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_1SJ1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SJ1-query.scw
PDB file :
Tito_Scwrl_1SJ1.pdb
: