Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVKVDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLHYNFMKNNNIKIVAAFDVDPAK-VGSVQQD-IPIYHLNDMEEIVRENGVEVVILTVPADEAQVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE
3KEQ Chain:B ((7-208))
-------IPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHL--SDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFM--------
General information:
TITO was launched using:
RESULT:
Template:
3KEQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142188 for 1415 contacts (-100.5/contact) +
2D Compatibility (PS) -21392 + (NN) -4546 + (LL) 1336
1D Compatibility (HY) -21600 + (ID) 4750
Total energy: -193140.0 ( -136.49 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3KEQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KEQ-query.scw
PDB file :
Tito_Scwrl_3KEQ.pdb
: