Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMKAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMELGADGVFVGSGIFKSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPMKGIEMSRLNPEDRMQDRSF
2NV1 Chain:D ((11-275))
--------RVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALER---------GVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELG----------------------
General information:
TITO was launched using:
RESULT:
Template:
2NV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180006 for 2223 contacts (-81.0/contact) +
2D Compatibility (PS) -28416 + (NN) -17181 + (LL) 1864
1D Compatibility (HY) -31200 + (ID) 10800
Total energy: -265739.0 ( -119.54 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_2NV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NV1-query.scw
PDB file :
Tito_Scwrl_2NV1.pdb
: