Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSIEIKSPEEFQAHINGEELVYVDYWKDNCPNCKMLDLSFAEFKNSEIASKVKVLKVKLEEMGENFFFDRDVQQTPTLVLYKGGEEIHRLNGFIPPNKIEEAVSLNA
1NW2 Chain:F ((10-101))
-----------FQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAH-ADKVTVAKLNVDENPETTS-QFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLA---
General information:
TITO was launched using:
RESULT:
Template:
1NW2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40577 for 623 contacts (-65.1/contact) +
2D Compatibility (PS) -9779 + (NN) -2851 + (LL) 1424
1D Compatibility (HY) -8000 + (ID) 1600
Total energy: -61383.0 ( -98.53 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_1NW2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NW2-query.scw
PDB file :
Tito_Scwrl_1NW2.pdb
: