Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLVFAAFIVLFSFSFLSTGLTAQAALKDGTYSVDYTVIQGDSDSASMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGNA----VSVTSKNASSDTRKVSFPVSTLSNPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNTTTPATKSDSSNKVTNPKSSDSSQMFLYGIIFVATGAGLILLKRRAIFK
3SZ6 Chain:B ((6-121))
--------------------------TKLADGKYNIAFTVWKGDKDESSRMNRYFESPATLTVKNGKQYVSFKVKDSTSIKSFQVEKDGQFVETTVLSENKKDNTRVVEFEVADLSKKLNGKVKINI--PIINYNASYDIRFVF-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3SZ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53475 for 732 contacts (-73.1/contact) +
2D Compatibility (PS) -12561 + (NN) -5463 + (LL) 5988
1D Compatibility (HY) -10800 + (ID) 2300
Total energy: -78611.0 ( -107.39 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_3SZ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SZ6-query.scw
PDB file :
Tito_Scwrl_3SZ6.pdb
: