Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVNKYYLDK
4ODI Chain:B ((21-245))
--LVLIRHGESTWNKENRFTGWTDVPLSPVGEQEAVEAAKALKEKGFEFDVAYTSVLQRAVVTCWTVLKGTDMCHIPVKSSWRLNERHYGALQGLNKAETAAKHGDEQVKIWRRSYDIPPPPLEKSDKRWPGNDAVYKMVPNEALPLTECLKDTVERVLPFWFDHIAPSIMEGKRVLVAAHGNSLRGLVKHLDKMSDEAVLELNIPTGVPLVYELDEDLQPVRHYYL--
General information:
TITO was launched using:
RESULT:
Template:
4ODI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82066 for 1864 contacts (-44.0/contact) +
2D Compatibility (PS) -24150 + (NN) -5155 + (LL) 260
1D Compatibility (HY) -22800 + (ID) 6850
Total energy: -140761.0 ( -75.52 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_4ODI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ODI-query.scw
PDB file :
Tito_Scwrl_4ODI.pdb
: