Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVFITTGTEHYLRQLMANYTGGNVTLLQNFSQSLLYQESTGEKLFQEGAEYRVLQSSGSIKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQSTKLTKAMNMNKFLIISFWDSEVFFHDWKKSPLSKEITNIMRKNNTQSGFSHEDIYHYPEFSHDAK
3FGV Chain:A ((13-91))
----------------------------------------------------------------MREVVIVKSTPQRGKFNAFAELVGKLVSETRDFPGCLGAYLMLAPERNEQVVMHIWETPDALEAYLTWRADRGDFLEIN------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41466 for 495 contacts (-83.8/contact) +
2D Compatibility (PS) -8576 + (NN) -3986 + (LL) 5028
1D Compatibility (HY) -800 + (ID) 450
Total energy: -50250.0 ( -101.52 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_3FGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FGV-query.scw
PDB file :
Tito_Scwrl_3FGV.pdb
: