Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRTAQKKGEDFVVFFFTPMCGSCQIASRLVDVVIEADGIQTEVAKVNLNYVPDIAQSLEITSVPALVKFKNGQPADLSYQLHDATAIFEFLYSE
2YN1 Chain:B ((23-102))
-----------LVDFWAEWCGPCKMIAPILDEIAEEYEGKLKVAKVNIDENPETAAKYGIRGIPTLMLFKNGEVAATKVGALSKSQLKEFL---
General information:
TITO was launched using:
RESULT:
Template:
2YN1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82910 for 530 contacts (-156.4/contact) +
2D Compatibility (PS) -8441 + (NN) -229 + (LL) 876
1D Compatibility (HY) -5600 + (ID) 1250
Total energy: -97554.0 ( -184.06 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_2YN1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YN1-query.scw
PDB file :
Tito_Scwrl_2YN1.pdb
: