Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRLLSIAFFGIAVICLLFPWMSSGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQRGKNRIVPFIGILILVLGLLNLAVRPLFGFDSFNFSIIDAYVSELVEPAFLIAVSASILSLIMYAIYLKKSENL
2PD0 Chain:B ((57-88))
----------------------------------------IIENNPTLVDGYADFCKHIFIPNFTEAKQSIV-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11073 for 105 contacts (-105.5/contact) +
2D Compatibility (PS) -3492 + (NN) -794 + (LL) 10112
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -8697.0 ( -82.83 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_2PD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PD0-query.scw
PDB file :
Tito_Scwrl_2PD0.pdb
: